Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW869_17795 | Not Available | Negative | 4213474 - 4215315 | 69044.9 |
| tonb-dependent receptor | DW869_17800 | Not Available | Negative | 4215328 - 4218582 | 120247.0 |
| mannonate dehydratase | DW869_17805 | Not Available | Negative | 4218786 - 4219961 | 44467.5 |
| sdr family nad(p)-dependent oxidoreductase | DW869_17810 | Not Available | Negative | 4220001 - 4220813 | 28669.7 |
| hypothetical protein | DW869_17815 | Not Available | Negative | 4220818 - 4221474 | 25556.2 |
| signal peptidase i | DW869_17820 | Not Available | Negative | 4221474 - 4222337 | 32868.6 |
| s26 family signal peptidase | DW869_17825 | Not Available | Negative | 4222375 - 4223799 | 55209.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DW869_17830 | Not Available | Negative | 4223803 - 4224558 | 27422.6 |
| duf2851 family protein | DW869_17835 | Not Available | Positive | 4224642 - 4225907 | 48573.2 |
| metallophosphatase | DW869_17840 | Not Available | Negative | 4226065 - 4227066 | 36892.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

