Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna(5-methylaminomethyl-2-thiouridine)- methyltransferase | DW869_17745 | Not Available | Positive | 4196906 - 4198033 | 42805.5 |
| aminopeptidase | DW869_17750 | Not Available | Positive | 4198037 - 4200559 | 97379.2 |
| glycoside hydrolase | DW869_17755 | Not Available | Negative | 4200570 - 4201607 | 38610.8 |
| carbohydrate kinase | DW869_17760 | Not Available | Negative | 4201647 - 4202567 | 34622.3 |
| sis domain-containing protein | DW869_17765 | Not Available | Negative | 4202678 - 4203280 | 21825.5 |
| tigr00730 family rossman fold protein | DW869_17770 | Not Available | Negative | 4203298 - 4203834 | 19870.1 |
| insulinase family protein | DW869_17775 | Not Available | Positive | 4203936 - 4205156 | 46403.1 |
| glycoside hydrolase family 95 protein | DW869_17780 | Not Available | Positive | 4205255 - 4207711 | 92159.2 |
| hybrid sensor histidine kinase/response regulator | DW869_17785 | Not Available | Positive | 4207916 - 4211803 | 148488.0 |
| duf4976 domain-containing protein | DW869_17790 | Not Available | Negative | 4211860 - 4213440 | 61283.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

