Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy-dependent translational throttle protein etta | DW869_01625 | Not Available | Positive | 407673 - 409361 | 63671.1 |
| tonb-dependent receptor | DW869_01630 | Not Available | Positive | 409731 - 413072 | 123040.0 |
| tonb-dependent receptor | DW869_01635 | Not Available | Positive | 413547 - 416294 | 101307.0 |
| duf5017 domain-containing protein | DW869_01640 | Not Available | Positive | 416321 - 417628 | 49329.2 |
| endonuclease/exonuclease/phosphatase | DW869_01645 | Not Available | Positive | 417713 - 419065 | 50822.0 |
| rpn family recombination-promoting nuclease/putative transposase | DW869_01650 | Not Available | Positive | 419340 - 420197 | 33154.7 |
| 30s ribosomal protein s16 | DW869_01655 | Not Available | Negative | 420271 - 420822 | 19788.4 |
| ferritin | DW869_01660 | Not Available | Positive | 421029 - 421511 | 17891.2 |
| alpha/beta hydrolase | DW869_01665 | Not Available | Negative | 421957 - 422802 | 30944.9 |
| oligopeptide transporter, opt family | DW869_01670 | Not Available | Negative | 422836 - 424827 | 70043.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

