Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna gyrase/topoisomerase iv subunit a | DW869_17180 | Not Available | Positive | 4075522 - 4078215 | 102634.0 |
| duf3316 domain-containing protein | DW869_17185 | Not Available | Positive | 4078219 - 4079064 | 31956.1 |
| peptidase s41 | DW869_17190 | Not Available | Positive | 4079073 - 4080101 | 39139.0 |
| Trna-leu | Not Available | Not Available | Positive | 4080170 - 4080254 | Not Available |
| duf5110 domain-containing protein | DW869_17200 | Not Available | Negative | 4080352 - 4082805 | 93653.3 |
| glycoside hydrolase family 97 protein | DW869_17205 | Not Available | Negative | 4082980 - 4084863 | 71910.4 |
| l-rhamnose mutarotase | DW869_17210 | Not Available | Negative | 4084935 - 4085318 | 15479.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_17215 | Not Available | Negative | 4085341 - 4087029 | 64006.0 |
| tonb-dependent receptor | DW869_17220 | Not Available | Negative | 4087055 - 4090126 | 113450.0 |
| alpha-l-fucosidase | DW869_17225 | Not Available | Negative | 4090217 - 4091863 | 62680.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

