Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkaline phosphatase family protein | DW869_17130 | Not Available | Negative | 4061940 - 4063523 | 59458.8 |
| duf4105 domain-containing protein | DW869_17135 | Not Available | Negative | 4063520 - 4064695 | 45036.3 |
| type iii pantothenate kinase | DW869_17140 | Not Available | Positive | 4064822 - 4065550 | 26911.9 |
| hypothetical protein | DW869_17145 | Not Available | Positive | 4065537 - 4066853 | 49274.1 |
| tetratricopeptide repeat protein | DW869_17150 | Not Available | Positive | 4066900 - 4068255 | 50268.8 |
| lps export abc transporter periplasmic protein lptc | DW869_17155 | Not Available | Positive | 4068258 - 4068902 | 24876.2 |
| hlyc/corc family transporter | DW869_17160 | Not Available | Positive | 4068916 - 4070175 | 47589.0 |
| peptidylprolyl isomerase | DW869_17165 | Not Available | Positive | 4070281 - 4072413 | 78849.4 |
| peptidylprolyl isomerase | DW869_17170 | Not Available | Negative | 4073177 - 4073818 | 23301.7 |
| glycine--trna ligase | DW869_17175 | Not Available | Negative | 4073829 - 4075370 | 59436.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

