Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW869_17080 | Not Available | Positive | 4046522 - 4049683 | 117862.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_17085 | Not Available | Positive | 4049707 - 4051437 | 65676.6 |
| nucleoside triphosphate pyrophosphohydrolase | DW869_17090 | Not Available | Negative | 4051631 - 4052419 | 30701.6 |
| valine--trna ligase | DW869_17095 | Not Available | Positive | 4052527 - 4055154 | 99817.7 |
| hypothetical protein | DW869_17100 | Not Available | Negative | 4055335 - 4055775 | 16110.3 |
| sigma-70 family rna polymerase sigma factor | DW869_17105 | Not Available | Positive | 4055920 - 4056465 | 21010.2 |
| hypothetical protein | DW869_17110 | Not Available | Positive | 4056462 - 4056839 | 14859.8 |
| hypothetical protein | DW869_17115 | Not Available | Negative | 4056913 - 4057362 | 17021.0 |
| hypothetical protein | DW869_17120 | Not Available | Negative | 4057433 - 4058425 | 37662.1 |
| protein translocase subunit seca | DW869_17125 | Not Available | Negative | 4058548 - 4061844 | 125159.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

