Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod/siga | DW869_01575 | Not Available | Positive | 397478 - 398338 | 32805.3 |
| hypothetical protein | DW869_01580 | Not Available | Positive | 398560 - 398955 | 15100.5 |
| clostripain | DW869_01585 | Not Available | Positive | 398966 - 400228 | 46782.5 |
| hypothetical protein | DW869_01590 | Not Available | Negative | 400212 - 400610 | 15058.6 |
| divalent metal cation transporter | DW869_01595 | Not Available | Positive | 400713 - 401966 | 45774.1 |
| potassium/proton antiporter | DW869_01600 | Not Available | Negative | 402043 - 403491 | 52867.7 |
| mate family efflux transporter | DW869_01605 | Not Available | Negative | 403488 - 404840 | 49414.7 |
| had family hydrolase | DW869_01610 | Not Available | Positive | 404930 - 405580 | 24626.3 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DW869_01615 | Not Available | Positive | 405633 - 406454 | 29550.9 |
| mfs transporter | DW869_01620 | Not Available | Positive | 406469 - 407635 | 43903.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

