Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase | DW869_17030 | Not Available | Positive | 4037056 - 4037895 | 30743.1 |
| n-acetylmuramic acid 6-phosphate etherase | DW869_17035 | Not Available | Positive | 4037892 - 4038728 | 30349.9 |
| simpl domain-containing protein | DW869_17040 | Not Available | Positive | 4038732 - 4039433 | 26268.6 |
| hybrid sensor histidine kinase/response regulator | DW869_17045 | Not Available | Negative | 4039430 - 4041094 | 63175.5 |
| 30s ribosomal protein s1 | DW869_17050 | Not Available | Positive | 4041291 - 4043087 | 67091.1 |
| cold shock domain-containing protein | DW869_17055 | Not Available | Positive | 4043337 - 4043783 | 17045.4 |
| ribonuclease z | DW869_17060 | Not Available | Positive | 4043854 - 4044783 | 35261.8 |
| rna polymerase sigma factor | DW869_17065 | Not Available | Positive | 4044817 - 4045368 | 21616.8 |
| hypothetical protein | DW869_17070 | Not Available | Positive | 4045413 - 4045790 | 14624.4 |
| hypothetical protein | DW869_17075 | Not Available | Positive | 4045802 - 4046248 | 17649.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

