Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-5-semialdehyde dehydrogenase | DW869_16910 | Not Available | Negative | 4013497 - 4014750 | 45493.7 |
| glutamate 5-kinase | DW869_16915 | Not Available | Negative | 4014788 - 4015870 | 39536.0 |
| cof-type had-iib family hydrolase | DW869_16920 | Not Available | Positive | 4016029 - 4016811 | 28817.6 |
| glycoside hydrolase family 92 protein | DW869_16925 | Not Available | Positive | 4017015 - 4019207 | 82090.2 |
| beta-glucosidase | DW869_16930 | Not Available | Negative | 4019330 - 4021639 | 83758.1 |
| alpha-l-fucosidase | DW869_16935 | Not Available | Negative | 4021693 - 4023084 | 53594.9 |
| hypothetical protein | DW869_16940 | Not Available | Negative | 4023298 - 4023798 | 19223.5 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW869_16945 | Not Available | Negative | 4024065 - 4026005 | 72026.3 |
| susc/raga family tonb-linked outer membrane protein | DW869_16950 | Not Available | Negative | 4026027 - 4029122 | 114033.0 |
| group ii intron reverse transcriptase/maturase | DW869_16960 | Not Available | Negative | 4029294 - 4031099 | 70771.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

