Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hybrid sensor histidine kinase/response regulator | DW869_16860 | Not Available | Positive | 4001058 - 4004990 | 149289.0 |
| rna-binding protein | DW869_16865 | Not Available | Positive | 4005256 - 4005501 | 9144.0 |
| threonine/serine exporter family protein | DW869_16870 | Not Available | Negative | 4005601 - 4006947 | 50204.2 |
| pasta domain-containing protein | DW869_16875 | Not Available | Positive | 4007097 - 4007738 | 23471.9 |
| rlua family pseudouridine synthase | DW869_16880 | Not Available | Positive | 4007757 - 4008830 | 40774.7 |
| d-alanine--d-alanine ligase | DW869_16885 | Not Available | Positive | 4008827 - 4009801 | 36067.1 |
| acyltransferase | DW869_16890 | Not Available | Positive | 4009830 - 4010987 | 44510.6 |
| hypothetical protein | DW869_16895 | Not Available | Positive | 4011046 - 4011696 | 24878.8 |
| rhodanese-like domain-containing protein | DW869_16900 | Not Available | Positive | 4011726 - 4012124 | 15066.1 |
| acetylornithine carbamoyltransferase | DW869_16905 | Not Available | Negative | 4012512 - 4013477 | 36456.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

