Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatase pap2 family protein | DW869_16810 | Not Available | Negative | 3981352 - 3982128 | 29161.7 |
| hypothetical protein | DW869_16815 | Not Available | Negative | 3982457 - 3984853 | 90548.4 |
| alpha-1,3/4-fucosidase | DW869_16820 | Not Available | Negative | 3985100 - 3986959 | 69765.9 |
| duf4981 domain-containing protein | DW869_16825 | Not Available | Negative | 3986977 - 3990036 | 116606.0 |
| beta-hexosaminidase | DW869_16830 | Not Available | Negative | 3990045 - 3992360 | 87245.9 |
| duf4976 domain-containing protein | DW869_16835 | Not Available | Negative | 3992378 - 3993961 | 61685.0 |
| hypothetical protein | DW869_16840 | Not Available | Positive | 3993954 - 3994145 | 7566.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_16845 | Not Available | Negative | 3994169 - 3996004 | 68434.3 |
| tonb-dependent receptor | DW869_16850 | Not Available | Negative | 3996034 - 3999255 | 116966.0 |
| xylanase | DW869_16855 | Not Available | Positive | 3999537 - 4000922 | 51168.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

