Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_16750 | Not Available | Positive | 3972347 - 3973288 | 36868.7 |
| hypothetical protein | DW869_16755 | Not Available | Positive | 3973590 - 3974804 | 45521.5 |
| hypothetical protein | DW869_16760 | Not Available | Positive | 3975201 - 3975386 | 7221.56 |
| hypothetical protein | DW869_16765 | Not Available | Positive | 3975346 - 3976002 | 25866.8 |
| duf3871 family protein | DW869_16775 | Not Available | Positive | 3976475 - 3977494 | 38648.2 |
| type ii toxin-antitoxin system prevent-host-death family antitoxin | DW869_16780 | Not Available | Positive | 3977629 - 3977883 | 9436.08 |
| txe/yoeb family addiction module toxin | DW869_16785 | Not Available | Positive | 3977880 - 3978149 | 10747.1 |
| hypothetical protein | DW869_16790 | Not Available | Positive | 3978240 - 3978515 | 10967.0 |
| dna repair protein | DW869_16795 | Not Available | Positive | 3978557 - 3979018 | 17229.8 |
| site-specific integrase | DW869_16800 | Not Available | Positive | 3979170 - 3979757 | 22548.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

