Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| demethylmenaquinone methyltransferase | DW869_16600 | Not Available | Positive | 3940604 - 3941341 | 27936.8 |
| shikimate dehydrogenase | DW869_16605 | Not Available | Positive | 3941360 - 3942100 | 27732.7 |
| alpha/beta hydrolase | DW869_16610 | Not Available | Positive | 3942108 - 3943058 | 36526.2 |
| tpm domain-containing protein | DW869_16615 | Not Available | Positive | 3943055 - 3943975 | 33346.0 |
| lema family protein | DW869_16620 | Not Available | Positive | 3944012 - 3944593 | 21752.9 |
| chorismate synthase | DW869_16625 | Not Available | Positive | 3944802 - 3945878 | 39168.8 |
| dipeptidase | DW869_16630 | Not Available | Positive | 3945892 - 3947244 | 49939.1 |
| nitroreductase family protein | DW869_16635 | Not Available | Positive | 3947257 - 3947886 | 23109.0 |
| ytxh domain-containing protein | DW869_16640 | Not Available | Negative | 3947974 - 3948222 | 9311.11 |
| hypothetical protein | DW869_16645 | Not Available | Negative | 3948428 - 3948751 | 11727.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

