Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| kama family protein | DW869_01525 | Not Available | Negative | 378639 - 380750 | 82107.5 |
| hypothetical protein | DW869_01530 | Not Available | Negative | 380825 - 381034 | 8349.72 |
| six-hairpin glycosidase | DW869_01535 | Not Available | Positive | 381070 - 384381 | 126722.0 |
| hydrolase | DW869_01540 | Not Available | Positive | 384433 - 387189 | 104273.0 |
| glycoside hydrolase family 28 protein | DW869_01545 | Not Available | Positive | 387256 - 388587 | 49440.7 |
| hypothetical protein | DW869_01550 | Not Available | Positive | 388596 - 389936 | 49865.7 |
| response regulator | DW869_01555 | Not Available | Negative | 390399 - 393536 | 119579.0 |
| helix-turn-helix domain-containing protein | DW869_01560 | Not Available | Positive | 393874 - 394710 | 32684.5 |
| duf417 domain-containing protein | DW869_01565 | Not Available | Positive | 394803 - 395393 | 21267.4 |
| do family serine endopeptidase | DW869_01570 | Not Available | Positive | 395715 - 397238 | 53839.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

