Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-glyceraldehyde 3-phosphate reductase | DW869_16295 | Not Available | Negative | 3875819 - 3876811 | 36721.9 |
| argininosuccinate lyase | DW869_16300 | Not Available | Negative | 3876835 - 3878175 | 50611.4 |
| srpbcc family protein | DW869_16305 | Not Available | Negative | 3878190 - 3878594 | 15197.6 |
| orotate phosphoribosyltransferase | DW869_16310 | Not Available | Negative | 3878692 - 3879330 | 23412.4 |
| comf family protein | DW869_16315 | Not Available | Negative | 3879430 - 3880125 | 26038.9 |
| recx family transcriptional regulator | DW869_16320 | Not Available | Negative | 3880106 - 3880591 | 18855.8 |
| peptide chain release factor n(5)-glutamine methyltransferase | DW869_16325 | Not Available | Negative | 3880593 - 3881429 | 31852.4 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DW869_16330 | Not Available | Positive | 3881474 - 3882526 | 39628.4 |
| hypothetical protein | DW869_16335 | Not Available | Positive | 3882654 - 3884051 | 52324.1 |
| isoprenyl transferase | DW869_16340 | Not Available | Positive | 3884085 - 3884816 | 28066.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

