Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidophosphoribosyltransferase | DW869_16245 | Not Available | Negative | 3864234 - 3865640 | 51992.8 |
| fluoride efflux transporter crcb | DW869_16250 | Not Available | Positive | 3865739 - 3866104 | 13272.6 |
| hypothetical protein | DW869_16255 | Not Available | Negative | 3866179 - 3866934 | 28172.2 |
| response regulator | DW869_16260 | Not Available | Positive | 3867231 - 3871220 | 152142.0 |
| pap2 family protein | DW869_16265 | Not Available | Positive | 3871327 - 3871944 | 23044.7 |
| 9-o-acetylesterase | DW869_16270 | Not Available | Positive | 3871982 - 3873898 | 72644.5 |
| type ii pantothenate kinase | DW869_16275 | Not Available | Positive | 3873976 - 3874800 | 29299.7 |
| dde transposase | DW869_16280 | Not Available | Positive | 3875092 - 3875428 | 13293.1 |
| Trna-leu | Not Available | Not Available | Positive | 3875572 - 3875659 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3875676 - 3875748 | Not Available |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

