Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit yajc | DW869_16195 | Not Available | Negative | 3855102 - 3855416 | 11609.3 |
| transcription antitermination factor nusb | DW869_16200 | Not Available | Negative | 3855473 - 3856399 | 36291.4 |
| duf3276 family protein | DW869_16205 | Not Available | Positive | 3856595 - 3856978 | 14786.4 |
| 50s ribosomal protein l25 | DW869_16210 | Not Available | Positive | 3857159 - 3857755 | 21429.4 |
| aminoacyl-trna hydrolase | DW869_16215 | Not Available | Positive | 3857780 - 3858343 | 20618.0 |
| rna-binding s4 domain-containing protein | DW869_16220 | Not Available | Positive | 3858343 - 3858771 | 16437.7 |
| hit family protein | DW869_16225 | Not Available | Negative | 3858862 - 3859287 | 16329.5 |
| sodium:proton antiporter | DW869_16230 | Not Available | Negative | 3859312 - 3861579 | 84385.5 |
| glycine cleavage system aminomethyltransferase gcvt | DW869_16235 | Not Available | Negative | 3861785 - 3862870 | 39665.6 |
| peptidase t | DW869_16240 | Not Available | Negative | 3862906 - 3864126 | 45302.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

