Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DW869_16095 | Not Available | Negative | 3830712 - 3831476 | 29786.5 |
| tetratricopeptide repeat protein | DW869_16100 | Not Available | Negative | 3831604 - 3833655 | 79971.5 |
| aldose 1-epimerase family protein | DW869_16105 | Not Available | Positive | 3833822 - 3834697 | 33987.7 |
| eama family transporter | DW869_16110 | Not Available | Negative | 3834746 - 3835666 | 34775.9 |
| phospho-sugar mutase | DW869_16115 | Not Available | Negative | 3835849 - 3837594 | 64726.5 |
| dipeptidase | DW869_16120 | Not Available | Negative | 3837908 - 3839548 | 61160.6 |
| m23 family peptidase | DW869_16125 | Not Available | Negative | 3839591 - 3841261 | 62671.9 |
| alanine dehydrogenase | DW869_16130 | Not Available | Positive | 3841455 - 3842546 | 38998.8 |
| twin-arginine translocase subunit tatc | DW869_16135 | Not Available | Negative | 3842633 - 3843463 | 32372.7 |
| twin-arginine translocase tata/tate family subunit | DW869_16140 | Not Available | Negative | 3843470 - 3843673 | 7276.18 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

