Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4099 domain-containing protein | DW869_15935 | Not Available | Negative | 3801024 - 3801782 | 28750.3 |
| m23 family peptidase | DW869_15940 | Not Available | Positive | 3802004 - 3802663 | 24159.7 |
| orotate phosphoribosyltransferase | DW869_15945 | Not Available | Negative | 3802696 - 3803532 | 32602.9 |
| hypothetical protein | DW869_15950 | Not Available | Negative | 3803666 - 3803824 | 6423.01 |
| hypothetical protein | DW869_15955 | Not Available | Positive | 3803838 - 3804068 | 8440.32 |
| hypothetical protein | DW869_15960 | Not Available | Positive | 3804069 - 3804236 | 6396.83 |
| ribonucleotide-diphosphate reductase subunit alpha | DW869_15965 | Not Available | Positive | 3804529 - 3805095 | 21419.5 |
| duf1273 family protein | DW869_15970 | Not Available | Positive | 3805097 - 3805600 | 18851.7 |
| hypothetical protein | DW869_15975 | Not Available | Positive | 3805713 - 3805889 | 6585.39 |
| deaminase | DW869_15980 | Not Available | Negative | 3805942 - 3806427 | 17463.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

