Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyth domain-containing protein | DW869_15605 | Not Available | Positive | 3750529 - 3750999 | 18287.6 |
| tonb-dependent receptor | DW869_15610 | Not Available | Positive | 3751089 - 3753563 | 91585.5 |
| rna polymerase sigma factor | DW869_15615 | Not Available | Positive | 3753732 - 3754235 | 19779.6 |
| hypothetical protein | DW869_15620 | Not Available | Negative | 3754316 - 3754702 | 14818.4 |
| sodium-dependent transporter | DW869_15625 | Not Available | Positive | 3754798 - 3756162 | 49159.4 |
| helix-hairpin-helix domain-containing protein | DW869_15630 | Not Available | Positive | 3756170 - 3757072 | 35320.7 |
| alkaline phosphatase | DW869_15635 | Not Available | Negative | 3757069 - 3758487 | 51615.1 |
| hypothetical protein | DW869_15640 | Not Available | Positive | 3758580 - 3758774 | 7489.45 |
| hypothetical protein | DW869_15645 | Not Available | Positive | 3758791 - 3759291 | 19273.6 |
| is1182 family transposase | DW869_15655 | Not Available | Positive | 3759899 - 3761554 | 65235.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

