Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | DW869_15555 | Not Available | Positive | 3739653 - 3740141 | 18915.8 |
| hypothetical protein | DW869_15560 | Not Available | Positive | 3740219 - 3743026 | 104134.0 |
| hypothetical protein | DW869_15565 | Not Available | Positive | 3743165 - 3743821 | 25861.1 |
| nudix domain-containing protein | DW869_15570 | Not Available | Positive | 3743772 - 3744662 | 34255.0 |
| nad-dependent epimerase/dehydratase family protein | DW869_15575 | Not Available | Positive | 3744670 - 3745512 | 31360.1 |
| hypothetical protein | DW869_15580 | Not Available | Positive | 3745619 - 3745972 | 13241.9 |
| m20/m25/m40 family metallo-hydrolase | DW869_15585 | Not Available | Negative | 3745978 - 3747042 | 39134.9 |
| long-chain fatty acid--coa ligase | DW869_15590 | Not Available | Positive | 3747256 - 3749061 | 68368.2 |
| peptide chain release factor 2 | DW869_15595 | Not Available | Positive | 3749119 - 3750234 | 42519.2 |
| hypothetical protein | DW869_15600 | Not Available | Positive | 3750273 - 3750458 | 7202.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

