Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DW869_15505 | Not Available | Positive | 3728195 - 3728758 | 21334.7 |
| duf2795 domain-containing protein | DW869_15510 | Not Available | Positive | 3728830 - 3729051 | 8716.91 |
| porin family protein | DW869_15515 | Not Available | Positive | 3729215 - 3729814 | 21506.2 |
| primosomal protein n' | DW869_15520 | Not Available | Positive | 3729887 - 3732349 | 93875.1 |
| phosphatase | DW869_15525 | Not Available | Positive | 3732397 - 3733107 | 26532.1 |
| low molecular weight phosphotyrosine protein phosphatase | DW869_15530 | Not Available | Positive | 3733115 - 3733585 | 17874.5 |
| hdig domain-containing protein | DW869_15535 | Not Available | Negative | 3733560 - 3735617 | 79191.8 |
| glutamate--trna ligase | DW869_15540 | Not Available | Positive | 3735699 - 3737216 | 57877.2 |
| 3-deoxy-d-manno-octulosonic acid transferase | DW869_15545 | Not Available | Positive | 3737229 - 3738449 | 46874.5 |
| hypothetical protein | DW869_15550 | Not Available | Positive | 3738988 - 3739110 | 4325.11 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

