Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AM38-19
Accession NumberQSHD00000000.1
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW869_00035 | Not Available | + | 8217 - 10103 | 72167.2 |
| susc/raga family tonb-linked outer membrane protein | DW869_00040 | Not Available | + | 10569 - 13724 | 114932.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW869_00045 | Not Available | + | 13746 - 15716 | 74025.4 |
| hypothetical protein | DW869_00050 | Not Available | - | 16030 - 16494 | 17273.6 |
| acetyl-coa synthetase | DW869_00055 | Not Available | - | 16539 - 18191 | 62298.4 |
| cupin domain-containing protein | DW869_00060 | Not Available | - | 18275 - 18829 | 20522.8 |
| duf1893 domain-containing protein | DW869_00065 | Not Available | - | 19007 - 19426 | 15717.2 |
| 4fe-4s dicluster domain-containing protein | DW869_00070 | Not Available | - | 19444 - 20970 | 55286.2 |
| aldo/keto reductase | DW869_00075 | Not Available | - | 21006 - 22388 | 52411.6 |
| hypothetical protein | DW869_00080 | Not Available | + | 22625 - 22921 | 11143.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
