Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | DW869_15395 | Not Available | Negative | 3705520 - 3709374 | 146579.0 |
| duf2062 domain-containing protein | DW869_15400 | Not Available | Negative | 3709367 - 3710560 | 44775.9 |
| is982 family transposase | DW869_15410 | Not Available | Positive | 3711658 - 3711970 | 11767.3 |
| is982 family transposase | DW869_15415 | Not Available | Positive | 3711981 - 3712283 | 11340.9 |
| integrase | DW869_15420 | Not Available | Negative | 3712373 - 3712975 | 22624.3 |
| duf3784 domain-containing protein | DW869_15430 | Not Available | Positive | 3713401 - 3713718 | 11649.9 |
| hypothetical protein | DW869_15435 | Not Available | Positive | 3714024 - 3714362 | 12594.3 |
| tonb-dependent receptor | DW869_15440 | Not Available | Positive | 3714387 - 3716693 | 86186.5 |
| hypothetical protein | DW869_15445 | Not Available | Positive | 3716697 - 3717047 | 13439.4 |
| luxr family transcriptional regulator | DW869_15450 | Not Available | Negative | 3716988 - 3717752 | 29423.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

