Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphofructokinase | DW869_15345 | Not Available | Negative | 3691411 - 3692421 | 35787.3 |
| hypothetical protein | DW869_15350 | Not Available | Positive | 3692569 - 3694074 | 57457.0 |
| hypothetical protein | DW869_15355 | Not Available | Positive | 3694079 - 3696001 | 73414.4 |
| duf3108 domain-containing protein | DW869_15360 | Not Available | Positive | 3695998 - 3696807 | 31356.0 |
| hypothetical protein | DW869_15365 | Not Available | Negative | 3696896 - 3697717 | 30751.9 |
| pas domain-containing protein | DW869_15370 | Not Available | Positive | 3697916 - 3700339 | 92953.8 |
| hypothetical protein | DW869_15375 | Not Available | Negative | 3700457 - 3701032 | 21488.1 |
| phenylacetate--coa ligase family protein | DW869_15380 | Not Available | Negative | 3701083 - 3702378 | 49526.5 |
| choloylglycine hydrolase | DW869_15385 | Not Available | Negative | 3702380 - 3704044 | 63246.5 |
| nad(p)/fad-dependent oxidoreductase | DW869_15390 | Not Available | Negative | 3704037 - 3705527 | 56636.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

