Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | DW869_15295 | Not Available | Positive | 3672780 - 3673016 | 8382.75 |
| beta-ketoacyl-[acyl-carrier-protein] synthase ii | DW869_15300 | Not Available | Positive | 3673035 - 3674300 | 44835.9 |
| ribonuclease 3 | DW869_15305 | Not Available | Positive | 3674303 - 3675229 | 35251.2 |
| sulfatase | DW869_15310 | Not Available | Negative | 3675374 - 3676927 | 57840.6 |
| glycoside hydrolase family 36 | DW869_15315 | Not Available | Negative | 3676946 - 3679021 | 78467.9 |
| glycoside hydrolase family 29 | DW869_15320 | Not Available | Negative | 3679028 - 3680413 | 52598.4 |
| duf229 domain-containing protein | DW869_15325 | Not Available | Negative | 3680417 - 3681853 | 55163.7 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_15330 | Not Available | Negative | 3681955 - 3683868 | 73430.1 |
| tonb-dependent receptor | DW869_15335 | Not Available | Negative | 3683889 - 3687143 | 121309.0 |
| hybrid sensor histidine kinase/response regulator | DW869_15340 | Not Available | Positive | 3687328 - 3691401 | 154737.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

