Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 9 protein | DW869_15245 | Not Available | Negative | 3658882 - 3659913 | 38600.2 |
| 4-phosphoerythronate dehydrogenase pdxb | DW869_15250 | Not Available | Positive | 3660018 - 3661043 | 38367.9 |
| duf4249 domain-containing protein | DW869_15255 | Not Available | Negative | 3661208 - 3662173 | 36370.1 |
| tonb-dependent receptor | DW869_15260 | Not Available | Negative | 3662180 - 3664834 | 100786.0 |
| fecr family protein | DW869_15265 | Not Available | Negative | 3664831 - 3665634 | 30911.8 |
| rna polymerase sigma-70 factor | DW869_15270 | Not Available | Negative | 3665704 - 3666213 | 19967.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW869_15275 | Not Available | Negative | 3666459 - 3668162 | 63029.3 |
| susc/raga family tonb-linked outer membrane protein | DW869_15280 | Not Available | Negative | 3668162 - 3671203 | 112142.0 |
| rna polymerase sigma-70 factor | DW869_15285 | Not Available | Positive | 3671532 - 3672077 | 21413.0 |
| phosphoribosylglycinamide formyltransferase | DW869_15290 | Not Available | Negative | 3672049 - 3672627 | 21386.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

