Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4405 domain-containing protein | DW869_15145 | Not Available | Negative | 3641068 - 3641487 | 15410.2 |
| crp/fnr family transcriptional regulator | DW869_15150 | Not Available | Negative | 3641567 - 3642121 | 21872.4 |
| kila-n domain-containing protein | DW869_15155 | Not Available | Negative | 3642178 - 3642987 | 30639.9 |
| tetr/acrr family transcriptional regulator | DW869_15160 | Not Available | Positive | 3643238 - 3643849 | 23587.8 |
| class i sam-dependent methyltransferase | DW869_15165 | Not Available | Positive | 3643982 - 3644836 | 33006.8 |
| hypothetical protein | DW869_15170 | Not Available | Positive | 3644833 - 3645534 | 26214.2 |
| abc transporter atp-binding protein | DW869_15175 | Not Available | Positive | 3645559 - 3647364 | 66275.8 |
| class i sam-dependent methyltransferase | DW869_15180 | Not Available | Positive | 3647375 - 3647995 | 23093.9 |
| abc transporter atp-binding protein | DW869_15185 | Not Available | Positive | 3648008 - 3649738 | 64007.9 |
| hypothetical protein | DW869_15190 | Not Available | Negative | 3650036 - 3650284 | 9097.76 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

