Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-binding protein | DW869_14890 | Not Available | Negative | 3597294 - 3597539 | 9049.81 |
| trigger factor | DW869_14895 | Not Available | Positive | 3597921 - 3599276 | 51542.8 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | DW869_14900 | Not Available | Positive | 3599457 - 3600128 | 24864.8 |
| atp-dependent clp protease atp-binding subunit clpx | DW869_14905 | Not Available | Positive | 3600252 - 3601502 | 46679.9 |
| dna helicase recq | DW869_14910 | Not Available | Positive | 3601660 - 3603840 | 81679.6 |
| tetratricopeptide repeat protein | DW869_14915 | Not Available | Positive | 3603979 - 3605742 | 68862.5 |
| duf3244 domain-containing protein | DW869_14920 | Not Available | Positive | 3605928 - 3606362 | 16352.8 |
| abc transporter permease | DW869_14925 | Not Available | Positive | 3606366 - 3607604 | 46309.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_14930 | Not Available | Positive | 3607606 - 3608679 | 39523.2 |
| o-antigen ligase family protein | DW869_14935 | Not Available | Positive | 3608683 - 3609930 | 47540.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

