Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DW869_14535 | Not Available | Negative | 3522003 - 3522497 | 18040.5 |
| hypothetical protein | DW869_14540 | Not Available | Negative | 3522537 - 3522767 | 8494.25 |
| duf4248 domain-containing protein | DW869_14545 | Not Available | Negative | 3522862 - 3523056 | 7367.08 |
| duf3987 domain-containing protein | DW869_14550 | Not Available | Negative | 3523440 - 3525245 | 67574.3 |
| virulence protein e | DW869_14555 | Not Available | Negative | 3525318 - 3525974 | 24757.5 |
| hypothetical protein | DW869_14560 | Not Available | Positive | 3526248 - 3526445 | 7961.82 |
| dna polymerase subunit beta | DW869_14565 | Not Available | Positive | 3526523 - 3526816 | 11114.5 |
| duf86 domain-containing protein | DW869_14570 | Not Available | Positive | 3526809 - 3527201 | 15161.6 |
| aaa family atpase | DW869_14575 | Not Available | Positive | 3527326 - 3528894 | 59935.5 |
| nucleotidyltransferase domain-containing protein | DW869_14580 | Not Available | Positive | 3529077 - 3529385 | 11591.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

