Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter | DW869_14485 | Not Available | Negative | 3508489 - 3509490 | 36967.9 |
| tetratricopeptide repeat protein | DW869_14490 | Not Available | Negative | 3509550 - 3510500 | 35751.7 |
| o-glcnacase | DW869_14495 | Not Available | Negative | 3510515 - 3512728 | 85039.3 |
| recq family atp-dependent dna helicase | DW869_14500 | Not Available | Negative | 3512775 - 3514670 | 72880.8 |
| single-stranded-dna-specific exonuclease recj | DW869_14505 | Not Available | Negative | 3514788 - 3516560 | 66543.5 |
| aminopeptidase | DW869_14510 | Not Available | Negative | 3516675 - 3517886 | 45970.4 |
| peptidase m24 family protein | DW869_14515 | Not Available | Negative | 3517915 - 3519306 | 51737.2 |
| patatin family protein | DW869_14520 | Not Available | Positive | 3519636 - 3520490 | 32936.4 |
| hypothetical protein | DW869_14525 | Not Available | Positive | 3520623 - 3520834 | 7389.82 |
| n-acetylmuramoyl-l-alanine amidase | DW869_14530 | Not Available | Negative | 3521093 - 3521611 | 19565.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

