Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_14435 | Not Available | Negative | 3497144 - 3498232 | 41380.2 |
| tonb-dependent receptor | DW869_14440 | Not Available | Negative | 3498266 - 3500287 | 76043.9 |
| alpha/beta hydrolase | DW869_14445 | Not Available | Positive | 3500842 - 3501813 | 34820.5 |
| prephenate dehydrogenase/arogenate dehydrogenase family protein | DW869_14450 | Not Available | Negative | 3502049 - 3502822 | 29390.4 |
| 3-deoxy-7-phosphoheptulonate synthase | DW869_14455 | Not Available | Negative | 3502827 - 3503894 | 39929.6 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW869_14460 | Not Available | Negative | 3503909 - 3505093 | 45052.1 |
| prephenate dehydratase | DW869_14465 | Not Available | Negative | 3505068 - 3505910 | 31728.1 |
| transcriptional regulator | DW869_14470 | Not Available | Negative | 3506168 - 3506524 | 13384.4 |
| protease | DW869_14475 | Not Available | Positive | 3506714 - 3507244 | 18938.9 |
| pyridoxal phosphate-dependent aminotransferase | DW869_14480 | Not Available | Positive | 3507313 - 3508488 | 44742.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

