Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| luxr family transcriptional regulator | DW869_14380 | Not Available | Negative | 3483233 - 3483853 | 23357.5 |
| fad-binding protein | DW869_14385 | Not Available | Negative | 3483981 - 3485624 | 60702.7 |
| duf1847 domain-containing protein | DW869_14390 | Not Available | Negative | 3485630 - 3486280 | 24388.4 |
| dna repair protein rada | DW869_14395 | Not Available | Negative | 3486320 - 3487687 | 49904.5 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | DW869_14400 | Not Available | Positive | 3488215 - 3490647 | 88625.7 |
| cofactor-independent phosphoglycerate mutase | DW869_14405 | Not Available | Positive | 3490652 - 3491863 | 44511.4 |
| threonine synthase | DW869_14410 | Not Available | Positive | 3491954 - 3493255 | 47697.9 |
| abc transporter atp-binding protein | DW869_14420 | Not Available | Negative | 3493850 - 3494857 | 37093.8 |
| iron abc transporter permease | DW869_14425 | Not Available | Negative | 3494857 - 3495888 | 36125.7 |
| abc transporter substrate-binding protein | DW869_14430 | Not Available | Negative | 3496004 - 3497140 | 42160.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

