Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW869_14325 | Not Available | Positive | 3467419 - 3467922 | 19121.3 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_14330 | Not Available | Positive | 3468017 - 3469276 | 45794.5 |
| cusa/czca family heavy metal efflux rnd transporter | DW869_14335 | Not Available | Positive | 3469288 - 3472371 | 112429.0 |
| tolc family protein | DW869_14340 | Not Available | Positive | 3472382 - 3473551 | 43859.6 |
| nitroreductase family protein | DW869_14345 | Not Available | Positive | 3473663 - 3474391 | 27942.3 |
| gfo/idh/moca family oxidoreductase | DW869_14355 | Not Available | Negative | 3474760 - 3476322 | 58071.8 |
| homoserine o-succinyltransferase | DW869_14360 | Not Available | Positive | 3476705 - 3477622 | 35746.9 |
| collagenase-like protease | DW869_14365 | Not Available | Positive | 3477619 - 3479448 | 69827.9 |
| zinc ribbon domain-containing protein | DW869_14370 | Not Available | Positive | 3479435 - 3480397 | 36802.1 |
| tonb-dependent receptor | DW869_14375 | Not Available | Negative | 3480637 - 3483063 | 92160.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

