Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3987 domain-containing protein | DW869_14160 | Not Available | Positive | 3423827 - 3425770 | 71676.4 |
| duf4248 domain-containing protein | DW869_14165 | Not Available | Positive | 3425788 - 3426012 | 8370.25 |
| dna-binding protein | DW869_14170 | Not Available | Positive | 3426295 - 3426834 | 19160.6 |
| n-acetylmuramoyl-l-alanine amidase | DW869_14175 | Not Available | Positive | 3427145 - 3427663 | 19703.7 |
| undecaprenyl-phosphate glucose phosphotransferase | DW869_14185 | Not Available | Negative | 3428089 - 3429564 | 57018.1 |
| dtdp-glucose 4,6-dehydratase | DW869_14190 | Not Available | Negative | 3429564 - 3430640 | 41496.0 |
| dtdp-4-dehydrorhamnose reductase | DW869_14195 | Not Available | Negative | 3430665 - 3431525 | 32219.3 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DW869_14200 | Not Available | Negative | 3431525 - 3432097 | 21745.9 |
| glucose-1-phosphate thymidylyltransferase | DW869_14205 | Not Available | Negative | 3432101 - 3433006 | 33625.5 |
| hypothetical protein | DW869_14210 | Not Available | Negative | 3433028 - 3433837 | 31213.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

