Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | DW869_14110 | Not Available | Positive | 3413758 - 3415431 | 62975.0 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | DW869_14115 | Not Available | Positive | 3415431 - 3416252 | 30339.4 |
| mmcq/yjbr family dna-binding protein | DW869_14120 | Not Available | Positive | 3416273 - 3416656 | 14976.9 |
| o-succinylbenzoate synthase | DW869_14125 | Not Available | Positive | 3416635 - 3417690 | 39820.9 |
| o-succinylbenzoic acid--coa ligase | DW869_14130 | Not Available | Positive | 3417687 - 3418772 | 40588.3 |
| arac family transcriptional regulator | DW869_14135 | Not Available | Positive | 3419028 - 3419912 | 34283.2 |
| duf4250 domain-containing protein | DW869_14140 | Not Available | Negative | 3419975 - 3420151 | 6921.42 |
| atp-dependent helicase | DW869_14145 | Not Available | Negative | 3420266 - 3422545 | 86482.3 |
| hypothetical protein | DW869_14150 | Not Available | Negative | 3422601 - 3423068 | 16988.2 |
| virulence protein e | DW869_14155 | Not Available | Positive | 3423254 - 3423823 | 21603.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

