Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding protein | DW869_14060 | Not Available | Negative | 3398722 - 3400143 | 53365.2 |
| susc/raga family tonb-linked outer membrane protein | DW869_14065 | Not Available | Negative | 3400155 - 3403406 | 121778.0 |
| arac family transcriptional regulator | DW869_14070 | Not Available | Negative | 3403598 - 3405415 | 70526.3 |
| diacylglucosamine hydrolase | DW869_14075 | Not Available | Negative | 3405412 - 3406002 | 22791.2 |
| clc family h(+)/cl(-) exchange transporter | DW869_14080 | Not Available | Negative | 3406012 - 3407610 | 59707.1 |
| marr family transcriptional regulator | DW869_14085 | Not Available | Negative | 3407643 - 3407972 | 12226.9 |
| pyridine nucleotide-disulfide oxidoreductase | DW869_14090 | Not Available | Negative | 3408006 - 3410507 | 90759.8 |
| mate family efflux transporter | DW869_14095 | Not Available | Positive | 3410744 - 3412093 | 49603.2 |
| hotdog fold thioesterase | DW869_14100 | Not Available | Positive | 3412185 - 3412592 | 14546.4 |
| isochorismate synthase | DW869_14105 | Not Available | Positive | 3412589 - 3413731 | 43169.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

