Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trka family potassium uptake protein | DW869_14005 | Not Available | Negative | 3382770 - 3383456 | 25637.0 |
| potassium transporter | DW869_14010 | Not Available | Negative | 3383459 - 3385306 | 68659.9 |
| trpb-like pyridoxal phosphate-dependent enzyme | DW869_14015 | Not Available | Positive | 3385483 - 3386847 | 50196.2 |
| deoxyribonuclease iv | DW869_14020 | Not Available | Negative | 3387163 - 3387999 | 31427.5 |
| hypothetical protein | DW869_14025 | Not Available | Negative | 3388042 - 3389331 | 48167.6 |
| Trna-glu | Not Available | Not Available | Positive | 3389474 - 3389548 | Not Available |
| alpha-l-fucosidase | DW869_14035 | Not Available | Positive | 3390013 - 3391497 | 57625.4 |
| tonb-dependent receptor | DW869_14040 | Not Available | Positive | 3391546 - 3394818 | 120748.0 |
| susd family outer membrane lipoprotein nanu | DW869_14045 | Not Available | Positive | 3394848 - 3396422 | 59978.8 |
| ahpc/tsa family protein | DW869_14055 | Not Available | Negative | 3397522 - 3398703 | 43778.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

