Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease muts2 | DW869_13955 | Not Available | Positive | 3367560 - 3370070 | 95359.8 |
| rna polymerase sigma-70 factor | DW869_13960 | Not Available | Positive | 3370150 - 3370701 | 21576.8 |
| fecr family protein | DW869_13965 | Not Available | Positive | 3370805 - 3371974 | 44559.6 |
| susc/raga family tonb-linked outer membrane protein | DW869_13970 | Not Available | Positive | 3371990 - 3375379 | 126869.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW869_13975 | Not Available | Positive | 3375398 - 3376912 | 56866.3 |
| hypothetical protein | DW869_13980 | Not Available | Positive | 3377024 - 3378709 | 62592.9 |
| metallophosphatase | DW869_13985 | Not Available | Positive | 3378753 - 3379916 | 44571.9 |
| l-serine ammonia-lyase | DW869_13990 | Not Available | Positive | 3380066 - 3381274 | 43967.2 |
| hypothetical protein | DW869_13995 | Not Available | Negative | 3381453 - 3381893 | 16654.3 |
| duf4738 domain-containing protein | DW869_14000 | Not Available | Negative | 3381986 - 3382555 | 21153.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

