Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l13 | DW869_13855 | Not Available | Negative | 3348899 - 3349360 | 17129.7 |
| hypothetical protein | DW869_13860 | Not Available | Negative | 3349660 - 3349905 | 9041.7 |
| zeta toxin | DW869_13865 | Not Available | Negative | 3349895 - 3350470 | 21483.9 |
| duf4488 domain-containing protein | DW869_13870 | Not Available | Negative | 3350831 - 3351325 | 18600.8 |
| asparagine--trna ligase | DW869_13875 | Not Available | Negative | 3351488 - 3352891 | 53432.1 |
| pseudouridine synthase | DW869_13880 | Not Available | Negative | 3352914 - 3354380 | 56182.9 |
| adenylosuccinate lyase | DW869_13885 | Not Available | Negative | 3354456 - 3355802 | 50932.1 |
| mate family efflux transporter | DW869_13890 | Not Available | Negative | 3355896 - 3357245 | 49693.5 |
| aminopeptidase | DW869_13895 | Not Available | Positive | 3357408 - 3358901 | 55034.0 |
| gntr family transcriptional regulator | DW869_13900 | Not Available | Negative | 3358999 - 3359364 | 14300.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

