Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3836 domain-containing protein | DW869_13805 | Not Available | Negative | 3341594 - 3342064 | 18198.9 |
| metallophosphoesterase | DW869_13810 | Not Available | Negative | 3342292 - 3343131 | 31352.6 |
| 1,4-dihydroxy-2-naphthoate polyprenyltransferase | DW869_13815 | Not Available | Positive | 3343205 - 3344095 | 32692.7 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DW869_13820 | Not Available | Negative | 3344146 - 3344628 | 17475.2 |
| faa hydrolase family protein | DW869_13825 | Not Available | Negative | 3344625 - 3345242 | 23340.1 |
| redox-sensing transcriptional repressor rex | DW869_13830 | Not Available | Negative | 3345247 - 3345897 | 24251.6 |
| translation initiation factor | DW869_13835 | Not Available | Positive | 3346015 - 3346353 | 12663.2 |
| elongation factor ts | DW869_13840 | Not Available | Negative | 3346412 - 3347401 | 35504.8 |
| 30s ribosomal protein s2 | DW869_13845 | Not Available | Negative | 3347534 - 3348373 | 30564.9 |
| 30s ribosomal protein s9 | DW869_13850 | Not Available | Negative | 3348506 - 3348892 | 14527.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

