Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | DW869_13755 | Not Available | Negative | 3333936 - 3335084 | 42392.3 |
| m23 family peptidase | DW869_13760 | Not Available | Negative | 3335092 - 3335949 | 32093.4 |
| 16s rrna processing protein rimm | DW869_13765 | Not Available | Negative | 3335968 - 3336486 | 19831.7 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DW869_13770 | Not Available | Negative | 3336498 - 3337802 | 47616.1 |
| duf4290 domain-containing protein | DW869_13775 | Not Available | Negative | 3337821 - 3338447 | 24903.9 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | DW869_13780 | Not Available | Negative | 3338494 - 3339183 | 25285.7 |
| yicc family protein | DW869_13785 | Not Available | Positive | 3339279 - 3340154 | 33867.7 |
| guanylate kinase | DW869_13790 | Not Available | Positive | 3340201 - 3340770 | 21367.4 |
| hypothetical protein | DW869_13795 | Not Available | Positive | 3340775 - 3340957 | 6793.87 |
| nicotinate-nucleotide adenylyltransferase | DW869_13800 | Not Available | Positive | 3340939 - 3341511 | 22162.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

