Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DW869_13705 | Not Available | Positive | 3322620 - 3323231 | 23004.6 |
| prolipoprotein diacylglyceryl transferase | DW869_13710 | Not Available | Negative | 3323273 - 3324079 | 31284.6 |
| diaminopimelate dehydrogenase | DW869_13715 | Not Available | Negative | 3324186 - 3325085 | 32319.9 |
| holliday junction branch migration protein ruva | DW869_13720 | Not Available | Positive | 3325261 - 3325854 | 21141.8 |
| hypothetical protein | DW869_13725 | Not Available | Negative | 3325942 - 3326766 | 30836.1 |
| hdig domain-containing protein | DW869_13730 | Not Available | Positive | 3326784 - 3328286 | 57599.9 |
| hemolysin iii | DW869_13735 | Not Available | Positive | 3328291 - 3328926 | 23650.2 |
| anaerobic ribonucleoside triphosphate reductase | DW869_13740 | Not Available | Positive | 3329221 - 3331497 | 86287.2 |
| anaerobic ribonucleoside-triphosphate reductase activating protein | DW869_13745 | Not Available | Positive | 3331503 - 3331961 | 17410.7 |
| rip metalloprotease rsep | DW869_13750 | Not Available | Negative | 3332536 - 3333879 | 50887.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

