Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class ii fructose-1,6-bisphosphate aldolase | DW869_13655 | Not Available | Negative | 3308403 - 3309407 | 36460.6 |
| 50s ribosomal protein l31 type b | DW869_13660 | Not Available | Positive | 3309739 - 3309993 | 9656.59 |
| duf3256 family protein | DW869_13665 | Not Available | Negative | 3310078 - 3310725 | 24349.6 |
| phenylacetate--coa ligase | DW869_13670 | Not Available | Positive | 3310839 - 3312137 | 49228.5 |
| amino acid-binding protein | DW869_13675 | Not Available | Positive | 3312149 - 3312577 | 15643.0 |
| response regulator | DW869_13680 | Not Available | Negative | 3312620 - 3315346 | 103065.0 |
| carbohydrate kinase | DW869_13685 | Not Available | Negative | 3315542 - 3316429 | 32432.2 |
| mfs transporter | DW869_13690 | Not Available | Negative | 3316457 - 3317617 | 41842.0 |
| duf4980 domain-containing protein | DW869_13695 | Not Available | Negative | 3317633 - 3319516 | 70929.3 |
| tonb-dependent receptor | DW869_13700 | Not Available | Negative | 3319665 - 3321983 | 86968.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

