Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypoxanthine phosphoribosyltransferase | DW869_13605 | Not Available | Negative | 3294786 - 3295322 | 20092.5 |
| nad(p)h-hydrate dehydratase | DW869_13610 | Not Available | Positive | 3295442 - 3296977 | 56207.5 |
| duf4831 family protein | DW869_13615 | Not Available | Positive | 3297014 - 3298063 | 38658.6 |
| mfs transporter | DW869_13620 | Not Available | Negative | 3298145 - 3299533 | 51163.3 |
| duf3332 domain-containing protein | DW869_13625 | Not Available | Positive | 3299707 - 3300258 | 19885.5 |
| duf4934 domain-containing protein | DW869_13630 | Not Available | Positive | 3300337 - 3301569 | 46096.8 |
| tolc family protein | DW869_13635 | Not Available | Negative | 3301650 - 3303023 | 50301.9 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW869_13640 | Not Available | Negative | 3303020 - 3306235 | 117313.0 |
| efflux rnd transporter periplasmic adaptor subunit | DW869_13645 | Not Available | Negative | 3306244 - 3307359 | 40051.3 |
| arac family transcriptional regulator | DW869_13650 | Not Available | Positive | 3307507 - 3308340 | 32289.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

