Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazolecarboxamide formyltransferase | DW869_13555 | Not Available | Positive | 3286926 - 3288101 | 43948.3 |
| port family protein | DW869_13560 | Not Available | Negative | 3288203 - 3288874 | 24189.6 |
| port family protein | DW869_13565 | Not Available | Negative | 3289020 - 3289625 | 21310.4 |
| porin family protein | DW869_13570 | Not Available | Negative | 3289829 - 3290365 | 19622.1 |
| hypothetical protein | DW869_13575 | Not Available | Negative | 3290570 - 3290761 | 6973.57 |
| m23 family peptidase | DW869_13580 | Not Available | Negative | 3290765 - 3291388 | 22827.6 |
| hypothetical protein | DW869_13585 | Not Available | Negative | 3291398 - 3292057 | 24397.2 |
| peptidoglycan editing factor pgef | DW869_13590 | Not Available | Negative | 3292097 - 3292879 | 28811.3 |
| gtpase obge | DW869_13595 | Not Available | Negative | 3292876 - 3294060 | 44180.3 |
| adenylate kinase | DW869_13600 | Not Available | Negative | 3294176 - 3294745 | 20885.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

