Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase family protein | DW869_13500 | Not Available | Positive | 3274276 - 3274836 | 20258.3 |
| precorrin-3b c(17)-methyltransferase | DW869_13505 | Not Available | Positive | 3275515 - 3276921 | 51796.8 |
| bifunctional cobalt-precorrin-7 (c(5))-methyltransferase/cobalt-precorrin-6b (c(15))-methyltransferase | DW869_13510 | Not Available | Positive | 3276926 - 3278107 | 44312.8 |
| precorrin-4 c(11)-methyltransferase | DW869_13515 | Not Available | Positive | 3278129 - 3279940 | 67020.4 |
| cobalt-precorrin-5b (c(1))-methyltransferase | DW869_13520 | Not Available | Positive | 3279966 - 3281762 | 66015.2 |
| abc transporter atp-binding protein | DW869_13525 | Not Available | Negative | 3281784 - 3282803 | 37541.6 |
| iron abc transporter permease | DW869_13530 | Not Available | Negative | 3282806 - 3283843 | 36757.8 |
| iron abc transporter substrate-binding protein | DW869_13535 | Not Available | Negative | 3283855 - 3285006 | 43246.9 |
| precorrin-2 c(20)-methyltransferase | DW869_13540 | Not Available | Positive | 3285110 - 3285838 | 27447.1 |
| hypothetical protein | DW869_13545 | Not Available | Positive | 3285922 - 3286116 | 7419.12 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

