Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonucleotide-diphosphate reductase subunit beta | DW869_13450 | Not Available | Positive | 3260555 - 3261604 | 41348.8 |
| methylenetetrahydrofolate reductase | DW869_13455 | Not Available | Negative | 3261695 - 3262648 | 35944.1 |
| tonb-dependent receptor | DW869_13460 | Not Available | Negative | 3262945 - 3265248 | 85921.1 |
| hypothetical protein | DW869_13465 | Not Available | Negative | 3265357 - 3265737 | 13813.3 |
| tonb-dependent receptor | DW869_13470 | Not Available | Positive | 3266177 - 3268354 | 81280.5 |
| abc transporter substrate-binding protein | DW869_13475 | Not Available | Positive | 3268369 - 3269526 | 43493.4 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DW869_13480 | Not Available | Negative | 3269634 - 3271394 | 64596.6 |
| arac family transcriptional regulator | DW869_13485 | Not Available | Negative | 3271581 - 3272468 | 34068.1 |
| arac family transcriptional regulator | DW869_13490 | Not Available | Negative | 3272500 - 3273408 | 35396.4 |
| flavodoxin | DW869_13495 | Not Available | Positive | 3273734 - 3274270 | 19869.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

