Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin biosynthesis protein cobd | DW869_13395 | Not Available | Negative | 3243841 - 3244773 | 34515.9 |
| pyridoxal phosphate-dependent class ii aminotransferase | DW869_13400 | Not Available | Negative | 3244755 - 3245765 | 38859.8 |
| cobyric acid synthase | DW869_13405 | Not Available | Negative | 3245758 - 3247248 | 55371.6 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DW869_13410 | Not Available | Negative | 3247248 - 3247823 | 22159.8 |
| cobyrinate a,c-diamide synthase | DW869_13415 | Not Available | Negative | 3247820 - 3249148 | 49093.6 |
| putative transporter | DW869_13420 | Not Available | Positive | 3249384 - 3251072 | 60780.7 |
| tonb-dependent receptor | DW869_13425 | Not Available | Positive | 3251465 - 3253642 | 81301.7 |
| tonb-dependent receptor | DW869_13430 | Not Available | Positive | 3254016 - 3256076 | 78288.4 |
| heme-binding protein | DW869_13435 | Not Available | Positive | 3256110 - 3257306 | 45139.6 |
| ribonucleoside-diphosphate reductase subunit alpha | DW869_13445 | Not Available | Positive | 3257873 - 3260392 | 95735.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

