Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AM38-19 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1498710 bp
Thymine Count
1452742 bp
Guanine Count
1040716 bp
Cytosine Count
1113152 bp
Genome Length
5106187 bp
Protein-coding Genes
4161 genes
Non-Coding Genes
82 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna guanosine(34) transglycosylase tgt | DW869_13275 | Not Available | Positive | 3222957 - 3224087 | 42650.6 |
| yjgp/yjgq family permease | DW869_13280 | Not Available | Positive | 3224098 - 3225270 | 45473.9 |
| had family phosphatase | DW869_13285 | Not Available | Negative | 3225271 - 3225891 | 23419.9 |
| hypothetical protein | DW869_13290 | Not Available | Negative | 3226050 - 3226544 | 18386.1 |
| phosphoserine phosphatase serb | DW869_13295 | Not Available | Positive | 3226817 - 3228049 | 46069.1 |
| dead/deah box helicase | DW869_13300 | Not Available | Positive | 3228070 - 3229347 | 47461.1 |
| duf4738 domain-containing protein | DW869_13310 | Not Available | Negative | 3230080 - 3230868 | 29375.2 |
| udp-glucose/gdp-mannose dehydrogenase family protein | DW869_13315 | Not Available | Negative | 3230892 - 3232205 | 48150.3 |
| spor domain-containing protein | DW869_13320 | Not Available | Positive | 3232324 - 3233454 | 42083.4 |
| fha domain-containing protein | DW869_13325 | Not Available | Positive | 3233470 - 3233994 | 19818.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

